Basic Information
Locus ID:
STRG.21827_chr08_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 109151731 | 109162282 | - | STRG.21827_chr08_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 157,317.59 Da | 49.94 | 63.78 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1242 | 1338 | 2.3E-15 | IPR003347 |
| Pfam | PF08879 | WRC | 23 | 54 | 2.0E-8 | IPR014977 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 390 | 452 | 2.5E-6 | IPR018866 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 788 | 1379 | 9.34E-36 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 780 | 1025 | 7.0E-91 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1089 | 1364 | 4.4E-71 | - |
| SMART | SM00558 | cupin_9 | 894 | 1355 | 9.9E-78 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 392 | 439 | 9.523925 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 913 | 1355 | 25.672457 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 22 | 71 | 11.590923 | IPR014977 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 999 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 999 | 1017 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07610.1 | Transcription factor jumonji (jmjC) domain-containing protein. IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase. | 0 |
| RefSeq | XP_048500185.1 | lysine-specific demethylase JMJ25 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SSE9 | Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M1B5 | Lysine-specific demethylase JMJ25-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology