Basic Information
Locus ID:
STRG.20624_chr08_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 4752843 | 4756207 | - | STRG.20624_chr08_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 65,767.32 Da | 35.17 | 86.06 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 49 | 210 | 2.36956E-92 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 408 | 589 | 1.60518E-83 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 243 | 360 | 3.8E-20 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 453 | 577 | 9.4E-15 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 46 | 212 | 1.1E-34 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 408 | 601 | 8.29E-40 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 232 | 385 | 1.27E-32 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 46 | 220 | 5.08E-44 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 233 | 395 | 3.3E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 591 | 4.8E-55 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 43 | 219 | 1.6E-60 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 42 | 601 | 8.7E-211 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_006429440.1 | pyruvate decarboxylase 2 [Citrus clementina] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | V4SUL7 | pyruvate decarboxylase OS=Citrus clementina OX=85681 GN=CICLE_v10011317mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology