Basic Information
Locus ID:
STRG.18817_chr07_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 76763791 | 76805201 | - | STRG.18817_chr07_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 54,522.74 Da | 50.20 | 82.10 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 6.0E-18 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 177 | 208 | 1.8E-5 | IPR002110 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 212 | 260 | 3.7E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 311 | 373 | 1.45E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 273 | 1.28E-48 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 136 | 2.3E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 155 | 269 | 1.1E-22 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 376 | 9.5E-8 | IPR013083 |
| SMART | SM00248 | ANK_2a | 176 | 205 | 4.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 219 | 251 | 7.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.037 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.9E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 176 | 208 | 11.8347 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.31873 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.203901 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 176 | 205 | 11.24058 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.00344 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.985412 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 317 | 367 | 9.686208 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 219 | 245 | 10.816076 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 219 | 245 | 10.84643 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 332 | 341 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 480 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_030934375.1 | E3 ubiquitin-protein ligase XBAT33 [Quercus lobata] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7N2MIP6 | RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology