Basic Information
Locus ID:
STRG.17807_chr09_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 73913756 | 73917481 | - | STRG.17807_chr09_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 58,623.06 Da | 45.97 | 105.15 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 75 | 1.1E-10 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 209 | 467 | 4.42E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 205 | 493 | 2.7E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 67 | 6.2E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 28 | 64 | 8.782121 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38392.1 | - | 0 |
| RefSeq | XP_050232884.1 | putative F-box protein At1g49610 [Mercurialis annua] | 0 |
| Q3EBJ8 | Putative F-box protein At2g39415 OS=Arabidopsis thaliana OX=3702 GN=At2g39415 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8J4RY47 | F-box domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_004558 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55900.1 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1166 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.38 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24763, nbisL1-mrna-24764 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.260 |
| Salicaceae | Populus euphratica | 1 | populus_peu04600 |
| Tamaricaceae | Reaumuria soongarica | 14 | MSTRG.13023_chr07_+, MSTRG.13852_chr08_-, MSTRG.4576_chr03_- ... |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1245, TC08G0764 |