Basic Information
Locus ID:
STRG.17638_chr09_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 4969253 | 4971778 | - | STRG.17638_chr09_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 28,333.08 Da | 41.01 | 64.70 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 9 | 255 | 1.3E-81 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 142 | 245 | 4.51E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 142 | 258 | 6.5E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 146 | 246 | 21.571995 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23050.1 | indole-3-acetic acid 7. Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. | 0 |
| RefSeq | XP_021280676.1 | auxin-induced protein AUX28-like [Herrania umbratica] | 0 |
| Q38825 | Auxin-responsive protein IAA7 OS=Arabidopsis thaliana OX=3702 GN=IAA7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3JL83 | Auxin-responsive protein OS=Corchorus olitorius OX=93759 GN=COLO4_15772 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology