Basic Information
Locus ID:
STRG.16745_chr08_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
elongator complex protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 93187468 | 93207053 | - | STRG.16745_chr08_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 92,626.12 Da | 38.49 | 90.22 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 215 | 256 | 0.067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 298 | 341 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 400 | 437 | 0.0035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 111 | 146 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 685 | 715 | 5.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 49 | 97 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 31 | 489 | 4.35E-32 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 582 | 834 | 4.37E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 165 | 9.9E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 176 | 265 | 2.9E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 675 | 841 | 3.6E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 282 | 403 | 1.9E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 404 | 511 | 2.8E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 572 | 674 | 2.4E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 677 | 716 | 9.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 625 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 256 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 438 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 147 | 0.82 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 667 | 0.0059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 97 | 4.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 783 | 832 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 342 | 0.0015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 684 | 718 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 684 | 725 | 13.11507 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 3.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 243 | 257 | 3.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 703 | 717 | 3.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49540.1 | elongator protein 2. | 0 |
| RefSeq | XP_002282940.1 | PREDICTED: elongator complex protein 2 isoform X2 [Vitis vinifera] | 0 |
| F4I1S7 | Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7A828 | Putative elongator complex protein 2 isoform X2 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021152 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5217, jg5231 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4074 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah025578, Ah026006, Ah026010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12863, Sbi_jg53008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8851 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027768 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33131, Sgl38383 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001994, gene:ENSEOMG00000002926 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013230, CQ.Regalona.r1.6BG0014380 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30215110, pistato.v30215540 |
| Apiaceae | Apium graveolens | 1 | Ag6G00526 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G002220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706798 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1112.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G15124 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G49540.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g36390.v2.2, Sp1g36410.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g061070.2N, BniB07g006270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2242 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0657s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1495 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019163, Pov_00040828 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05770, Lb5G27517 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1919, BH08.2010, CH08.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0635580, gene-QOZ80_8BG0664380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0021770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018631 |
| Poaceae | Oryza coarctata | 1 | Oco15G011920 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g38570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G175600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403312 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G000360, Chr29G003100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G184600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015670, gene_TRIDC1BG016900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G104700.1, TraesCS1B02G116100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb033820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47610 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23184 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1898, evm.TU.LG14.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.126 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15623, nbisL1-mrna-2951 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17460 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004689 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11647 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2808 |
| Salicaceae | Populus euphratica | 3 | populus_peu07105, populus_peu21078, populus_peu21079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605667, gene-LOC132606061 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022021 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16745_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1425 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11250.v3.1 |