Basic Information
Locus ID:
STRG.16337_chr06_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 80233645 | 80236047 | - | STRG.16337_chr06_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 68,794.41 Da | 43.58 | 87.86 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 459 | 481 | 0.0055 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 255 | 275 | 0.0032 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 384 | 409 | 2.3E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 421 | 447 | 0.84 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 183 | 210 | 4.7E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 355 | 377 | 0.015 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 281 | 327 | 8.2E-13 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 83 | 233 | 1.8E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 405 | 574 | 3.5E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 234 | 333 | 2.4E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 334 | 404 | 3.0E-6 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 183 | 218 | 8.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 284 | 316 | 6.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 385 | 418 | 1.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 255 | 275 | 0.0021 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 382 | 417 | 9.503505 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 181 | 216 | 8.604678 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 281 | 315 | 12.594591 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33680.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_034690364.1 | pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Vitis riparia] | 0 |
| P93005 | Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J5BUC4 | DYW_deaminase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_002626 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59044, Sbi_jg63579 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23302 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02459, Sgl07612 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0024540, CQ.Regalona.r1.6AG0008160 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G26839 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.999, evm.TU.LG25.339 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26870, gene.Posoc03g26890 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7526 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2415 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.240 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001976, Maker00002066 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1854 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16337_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0297 |