Basic Information
Locus ID:
STRG.15777_chr06_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 67408386 | 67410239 | - | STRG.15777_chr06_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 43,182.59 Da | 55.42 | 75.51 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 105 | 118 | 15.0 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 178 | 206 | 0.0023 | IPR006597 |
| Pfam | PF01753 | MYND finger | 335 | 374 | 3.6E-8 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 139 | 175 | 0.34 | IPR006597 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 82 | 1.31E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 328 | 378 | 4.01E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 92 | 206 | 1.7E-12 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 74 | 238 | 3.8E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 314 | 380 | 4.9E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 332 | 374 | 10.902658 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 251 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021818283.1 | F-box protein At1g67340-like [Prunus avium] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7ABD9 | MYND-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022232 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology