Basic Information
Locus ID:
STRG.14962_chr08_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 97425358 | 97427208 | - | STRG.14962_chr08_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 45,032.10 Da | 86.38 | 60.81 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 197 | 238 | 1.61053E-24 | - |
| Pfam | PF13639 | Ring finger domain | 196 | 238 | 5.6E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 10 | 41 | 9.0E-13 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 279 | 383 | 2.2E-35 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 244 | 4.64E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 244 | 4.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 237 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 238 | 12.017182 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 417 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_028078072.1 | probable E3 ubiquitin-protein ligase RHC2A [Camellia sinensis] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S4E5K2 | RING-type E3 ubiquitin transferase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_024574 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology