Basic Information
Locus ID:
STRG.12160_chr02_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 16862610 | 16873015 | - | STRG.12160_chr02_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 125,037.40 Da | 42.01 | 80.76 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 500 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 543 | 0.052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 926 | 960 | 0.0051 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 460 | 960 | 1.34E-42 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 362 | 479 | 2.38E-10 | IPR036322 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 946 | 1111 | 6.67E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 560 | 692 | 1.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 745 | 976 | 9.7E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 334 | 559 | 5.2E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 977 | 1137 | 2.3E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 549 | 590 | 22.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 6.0E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 839 | 875 | 22.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.7E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 921 | 960 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 453 | 9.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 500 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1012 | 1052 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 503 | 544 | 0.0057 | IPR001680 |
| SMART | SM00320 | WD40_4 | 593 | 633 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 878 | 918 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 392 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 677 | 140.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 928 | 962 | 9.889235 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 608 | 642 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 928 | 969 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.13881 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.925014 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 466 | 509 | 10.307941 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1138 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010687939.1 | topless-related protein 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A834SNG4 | Topless-related protein 4-like isoform X1 OS=Senna tora OX=362788 GN=G2W53_038572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology