Basic Information
Locus ID:
STRG.10618_chr07_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 62669658 | 62700221 | - | STRG.10618_chr07_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 53,189.83 Da | 44.29 | 73.35 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 374 | 0.008 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 403 | 1.13E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 460 | 3.4E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 117 | 156 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 375 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 331 | 0.19 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_010684410.1 | autophagy-related protein 18a [Beta vulgaris subsp. vulgaris] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YQG3 | Autophagy-related protein 18a-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology