Basic Information
Locus ID:
SOLCI007518200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold9943 | 8897 | 9646 | + | SOLCI007518200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 28,790.48 Da | 39.19 | 83.33 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 201 | 243 | 4.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 248 | 2.31E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 249 | 9.1E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 202 | 242 | 5.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 202 | 243 | 12.504031 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010317305.1 | RING-H2 finger protein ATL81-like [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2AP74 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_025823 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132624626 |
| Solanaceae | Solanum chilense | 1 | SOLCI007518200 |