Basic Information
Locus ID:
SOLCI007513400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold992 | 135898 | 149027 | - | SOLCI007513400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 124,718.05 Da | 44.41 | 77.21 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 950 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 482 | 2.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 342 | 658 | 1.28E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 839 | 1106 | 1.57E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 994 | 1116 | 1.8E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 738 | 993 | 1.3E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 507 | 684 | 6.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 312 | 506 | 8.8E-27 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.0E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 0.64 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 482 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 435 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1043 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 958 | 999 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 865 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 2.4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.19 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.682228 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 952 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 952 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 448 | 482 | 8.729241 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1137 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_015085046.1 | protein TPR2-like isoform X1 [Solanum pennellii] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BZX6 | TOPLESS OS=Solanum chilense OX=4083 GN=EJD97_025807 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology