Basic Information
Locus ID:
SOLCI007512100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold992 | 36396 | 37301 | + | SOLCI007512100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 33,751.85 Da | 75.78 | 50.80 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 174 | 216 | 1.9E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 37 | 3.0E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 223 | 4.71E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 221 | 1.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 175 | 215 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 175 | 216 | 12.459772 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 301 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_015083590.1 | probable E3 ubiquitin-protein ligase RHC1A [Solanum pennellii] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C150 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_025795 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology