Basic Information
Locus ID:
SOLCI007494800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold985 | 3074 | 4609 | + | SOLCI007494800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 57,548.78 Da | 43.31 | 81.55 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 360 | 405 | 1.4E-7 | IPR001810 |
| Pfam | PF11543 | Nuclear pore localisation protein NPL4 | 17 | 89 | 1.3E-5 | IPR024682 |
| SUPERFAMILY | SSF81383 | F-box domain | 358 | 424 | 1.7E-12 | IPR036047 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 106 | 9.87E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 11 | 90 | 1.3E-5 | - |
| Gene3D | G3DSA:3.40.1000.30 | - | 180 | 360 | 1.8E-18 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 361 | 435 | 3.2E-10 | - |
| SMART | SM00256 | fbox_2 | 364 | 404 | 1.8E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 358 | 404 | 10.292301 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 157 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23780.1 | F-box family protein. | 0 |
| RefSeq | XP_015056722.1 | F-box protein SKIP22-like [Solanum pennellii] | 0 |
| Q9ZUB8 | F-box protein SKIP22 OS=Arabidopsis thaliana OX=3702 GN=SKIP22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BZU1 | F-box domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_025733 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1181, jg28587 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26289 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009249 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g222720 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg41456 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27946 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005044 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl55361, Sgl60708, Sgl61220 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020018, gene:ENSEOMG00000039198 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0000520, CQ.Regalona.r1.9AG0023940 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30103890, pistato.v30103900 |
| Apiaceae | Apium graveolens | 2 | Ag4G02886, Ag9G00234 |
| Arecaceae | Cocos nucifera | 2 | scaffold019274G000010, scaffold025043G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709865 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2529.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G27921 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G23770.1, AT1G23780.1, AT1G70360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009461m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g21160.v2.2, Sp7g01980.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g023520.2N, BniB03g019320.2N, BniB03g031030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0463 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14850 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0224s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31080 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.638, evm.TU.LG08.745 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007899, Pov_00030499 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18688 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0239690, gene-QOZ80_3BG0288330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0394690.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_069623, gene-QYE76_069624 |
| Poaceae | Oryza coarctata | 1 | Oco05G007280 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G430300 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G028450, Chr04G000890, Chr07G001010, Chr12G011010 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G407300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG009210, gene_TRIDC4BG041630 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G060300.1.cds1, TraesCS4B02G235800.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb009480_P001, Zm00001eb051260_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2399, nbis-gene-3998 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1726, Zma_g4104 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1870, evm.TU.LG15.1289 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27570 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1997, evm.TU.Scaffold_2_RagTag.430 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28220, nbisL1-mrna-4764, nbisL1-mrna-5807 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9422 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3527 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.255, add.evm.TU.utg000016l.113 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004934, Maker00016240 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18652 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13940 |
| Salicaceae | Populus euphratica | 5 | populus_peu08877, populus_peu08878, populus_peu09703 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625930 |
| Solanaceae | Solanum chilense | 1 | SOLCI007494800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002974 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14268_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1883 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27410.v3.1 |