Basic Information
Locus ID:
SOLCI007454300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold9712 | 2120 | 2914 | + | SOLCI007454300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 29,736.14 Da | 48.91 | 93.71 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 46 | 85 | 4.8E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 105 | 4.59E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 136 | 2.5E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 46 | 100 | 0.0089 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 46 | 101 | 10.069786 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 65 | 74 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004239073.1 | uncharacterized protein LOC101249456 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2AR40 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_025580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology