Basic Information
Locus ID:
SOLCI007440700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold9676 | 9912 | 11177 | + | SOLCI007440700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 47,574.90 Da | 41.40 | 104.42 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 54 | 6.32872E-18 | - |
| Pfam | PF04564 | U-box domain | 6 | 80 | 9.3E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 85 | 7.57E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 129 | 401 | 2.77E-11 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 85 | 3.1E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 115 | 408 | 5.4E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 76 | 1.2E-23 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 83 | 34.314236 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_015072425.1 | E3 ubiquitin-protein ligase PUB24-like [Solanum pennellii] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AX35 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_025530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology