Basic Information
Locus ID:
SOLCI007390700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Elongation factor Tu C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold95 | 202099 | 214860 | + | SOLCI007390700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 71,721.16 Da | 38.84 | 88.79 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16267 | HBS1-like_II | 452 | 536 | 1.81555E-23 | - |
| CDD | cd01883 | EF1_alpha | 226 | 446 | 6.61569E-124 | - |
| CDD | cd04093 | HBS1_C_III | 540 | 648 | 4.73672E-38 | - |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 224 | 441 | 1.8E-45 | IPR000795 |
| Pfam | PF03144 | Elongation factor Tu domain 2 | 473 | 535 | 5.0E-8 | IPR004161 |
| Pfam | PF03143 | Elongation factor Tu C-terminal domain | 557 | 648 | 2.6E-11 | IPR004160 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 50 | 77 | 9.8E-8 | IPR001876 |
| SUPERFAMILY | SSF50447 | Translation proteins | 444 | 540 | 1.57E-20 | IPR009000 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 223 | 467 | 8.53E-61 | IPR027417 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 52 | 76 | 1.73E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 83 | 108 | 2.35E-6 | IPR036443 |
| SUPERFAMILY | SSF50465 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 545 | 649 | 9.66E-22 | IPR009001 |
| Gene3D | G3DSA:3.40.50.300 | - | 211 | 447 | 1.9E-83 | IPR027417 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 450 | 539 | 1.2E-24 | - |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 544 | 653 | 4.3E-29 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 48 | 81 | 2.8E-6 | - |
| SMART | SM00547 | zf_4 | 51 | 75 | 1.1E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 83 | 107 | 0.075 | IPR001876 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 222 | 447 | 56.109848 | IPR000795 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 81 | 110 | 8.490245 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 49 | 78 | 9.596881 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 85 | 104 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 53 | 72 | - | IPR001876 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 321 | 332 | 8.6E-20 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 285 | 293 | 8.6E-20 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 366 | 375 | 8.6E-20 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 226 | 239 | 8.6E-20 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 305 | 315 | 8.6E-20 | IPR000795 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 171 | - | - |
| Coils | Coil | Coil | 645 | 653 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10630.1 | Translation elongation factor EF1A/initiation factor IF2gamma family protein. | 0 |
| RefSeq | XP_015061775.1 | HBS1-like protein isoform X1 [Solanum pennellii] | 0 |
| Q2KHZ2 | HBS1-like protein OS=Bos taurus OX=9913 GN=HBS1L PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2CJZ6 | HBS1-like protein OS=Solanum chilense OX=4083 GN=EJD97_025325 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg12968, jg8467, jg8468 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13102 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034378 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g034750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20486, Sbi_jg23288 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17085 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009126 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63542, Sgl68026 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017535, gene:ENSEOMG00000018483 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013340, CQ.Regalona.r1.2BG0015310 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30251970 |
| Apiaceae | Apium graveolens | 1 | Ag9G01513 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G012640, COCNU_09G006940 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716341, gene-LOC103719267 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2229.V1.1, AsparagusV1_09.1541.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G26283 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10630.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012906m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32810.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g026600.2N, BniB08g004590.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2396 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g05610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0036s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g06390 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-351 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1608 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004307, Pov_00011655 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09225 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.1657, BH01.1855, BH09.2953, CH01.1960 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0224220, gene-QOZ80_3BG0269250 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0194480.1, HORVU.MOREX.r3.2HG0209800.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_046053, gene-QYE76_047565 |
| Poaceae | Oryza coarctata | 3 | Oco07G014720, Oco07G019310, Oco08G014210 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g02720.2, LOC_Os04g50870.1, LOC_Os04g58140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G213000, gene-BS78_06G284200 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0300097, Pt_Chr0300136, Pt_Chr0300139, Pt_Chr0301480 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G024900, Chr07G023710, Chr12G027670, Chr25G000640 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G753400, Tel2E01G943100, Tel2E01G962300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063670, gene_TRIDC2AG077490 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G444100.1, TraesCS2A02G592500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb066140_P003, Zm00001eb430090_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39587, nbis-gene-6200 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22229, Zma_g866 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.858, evm.TU.LG15.74 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g14840 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.980 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13510 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10848 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9218 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.253 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003942 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3688 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7723 |
| Salicaceae | Populus euphratica | 2 | populus_peu04594, populus_peu13078 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633261 |
| Solanaceae | Solanum chilense | 2 | SOLCI005652600, SOLCI007390700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007605, gene-LOC107014698 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11197_chr05_-, STRG.7250_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1520 |
| Zosteraceae | Zostera marina | 2 | Zosma04g23230.v3.1, Zosma06g29070.v3.1 |