Basic Information
Locus ID:
SOLCI007386100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold949 | 257422 | 258651 | - | SOLCI007386100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 44,014.79 Da | 30.94 | 88.70 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 198 | 328 | 2.3E-12 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 36 | 116 | 3.5E-6 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 31 | 174 | 2.35E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 181 | 329 | 3.66E-16 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 172 | 329 | 5.6E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 25 | 171 | 8.1E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 61 | 176 | 1.7 | IPR000782 |
| SMART | SM00554 | fasc_3 | 225 | 329 | 2.1E-13 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 326 | 11.32337 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 25 | 173 | 10.657719 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 383 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_015082454.1 | fasciclin-like arabinogalactan protein 2 [Solanum pennellii] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C892 | Fasciclin-like arabinogalactan protein 2 OS=Solanum chilense OX=4083 GN=EJD97_025312 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology