Basic Information
Locus ID:
SOLCI007336600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold93 | 291147 | 298813 | - | SOLCI007336600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 54,972.42 Da | 47.83 | 71.77 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 488 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 219 | 254 | 8.2E-10 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 177 | 489 | 1.94E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 270 | 405 | 9.3E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 171 | 269 | 1.5E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 411 | 492 | 1.2E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 337 | 76.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 444 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 211 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 254 | 1.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 488 | 2.5E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 222 | 258 | 13.079218 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 493 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 456 | 493 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 222 | 263 | 16.523727 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 241 | 255 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16405.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015059277.1 | WD repeat-containing protein 13 [Solanum pennellii] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CFD5 | WD_REPEATS_REGION domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_025151 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28789 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21675 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010181 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12390, Sbi_jg45952 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20283 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022488 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56162, Sgl61603 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020089, gene:ENSEOMG00000038701 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007200, CQ.Regalona.r1.9AG0017380 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30115330 |
| Apiaceae | Apium graveolens | 1 | Ag9G00084 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G013210 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717803 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2882.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G14695 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G16405.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022667m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g063620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1544 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1641 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g02080 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0098s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5654 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.189 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007478 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37357, Lb3G17342, Lb7G34925, Lb7G34926 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3461, BH02.3492, CH02.3036 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0035400, gene-QOZ80_1BG0085470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0293010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056176 |
| Poaceae | Oryza coarctata | 2 | Oco01G021700, Oco02G022300 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g56860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G294500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601577, Pt_Chr0601607 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G008180, Chr05G025360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G507800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG045830, gene_TRIDC3BG051940 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G320200.1, TraesCS3B02G345700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb151660_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31233 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11267 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1783, evm.TU.LG22.66 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g04060 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2238 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17195 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3311 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.122 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016571 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4683 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14159 |
| Salicaceae | Populus euphratica | 1 | populus_peu08827 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599205 |
| Solanaceae | Solanum chilense | 1 | SOLCI007336600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005248 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16844 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1004 |
| Zosteraceae | Zostera marina | 1 | Zosma06g23550.v3.1 |