Basic Information
Locus ID:
SOLCI007336500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold93 | 284911 | 290413 | + | SOLCI007336500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 24,977.76 Da | 51.55 | 50.97 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 22 | 136 | 5.9E-23 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 141 | 189 | 5.8E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 193 | 5.32E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 203 | 3.3E-20 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 135 | 2.0E-30 | IPR043151 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 2.5E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 1.1E-40 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 9.2141 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 23.781452 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_004230951.1 | chromatin remodeling protein EBS [Solanum lycopersicum] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CDS5 | Chromatin remodeling protein SHL-like OS=Solanum chilense OX=4083 GN=EJD97_025150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology