Basic Information
Locus ID:
SOLCI007334600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold93 | 111956 | 112825 | - | SOLCI007334600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 33,067.26 Da | 44.23 | 82.32 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 241 | 285 | 3.0E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 242 | 288 | 9.84E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 289 | 1.2E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 285 | 11.338544 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_027769754.1 | uncharacterized protein LOC114075577 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2CGF0 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_025133 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644723 |
| Solanaceae | Solanum chilense | 1 | SOLCI007334600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075577 |