Basic Information
Locus ID:
SOLCI007324400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold927 | 71996 | 72346 | - | SOLCI007324400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 12,983.39 Da | 28.71 | 94.83 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 5 | 79 | 6.2E-8 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 7.66E-15 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 96 | 3.7E-11 | - |
| SMART | SM00213 | ubq_7 | 1 | 78 | 8.7E-5 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 82 | 13.184215 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006342714.1 | PREDICTED: uncharacterized protein LOC102580147 [Solanum tuberosum] | 0 |
| TrEMBL | A0A6N2C457 | Ubiquitin-like domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_025068 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10615 |
| Apiaceae | Apium graveolens | 1 | Ag11G03313 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.994.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32360.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g012060.2N, BniB08g020360.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026741 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1355 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20438, nbisL1-mrna-20462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8800 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21332 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.321 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17198 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4733 |
| Salicaceae | Populus euphratica | 2 | populus_peu22662, populus_peu24076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602560 |
| Solanaceae | Solanum chilense | 2 | SOLCI003907900, SOLCI007324400 |