halophFGD

Basic Information

Locus ID: SOLCI007292900

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: Glyco_18

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold9154	3842	5139	-	SOLCI007292900

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.70	41,771.49 Da	39.05	76.17	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02879	GH18_plant_chitinase_class_V	39	374	4.59774E-128	-
Pfam	PF00704	Glycosyl hydrolases family 18	44	368	4.2E-74	IPR001223
SUPERFAMILY	SSF54556	Chitinase insertion domain	274	339	6.54E-12	IPR029070
SUPERFAMILY	SSF51445	(Trans)glycosidases	42	377	7.03E-68	IPR017853
Gene3D	G3DSA:3.20.20.80	Glycosidases	57	369	3.7E-98	-
Gene3D	G3DSA:3.10.50.10	-	273	339	3.7E-98	IPR029070
SMART	SM00636	2g34	40	368	1.4E-88	IPR011583
ProSiteProfiles	PS51910	Glycosyl hydrolases family 18 (GH18) domain profile.	40	384	64.45665	IPR001223
ProSitePatterns	PS01095	Glycosyl hydrolases family 18 (GH18) active site signature.	146	154	-	IPR001579

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds) GO:0008061 (chitin binding)

KEGG Pathway

KO Term:

K01183 (chitinase [EC:3.2.1.14])

Pathway:

ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R01206 (Chitin + H2O <=> N-Acetyl-D-glucosamine + Chitin) R02334 (Chitin + H2O <=> Chitobiose + Chitin)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain.
RefSeq	XP_004242978.4	extensin-like [Solanum lycopersicum]
Swiss-Prot	A0A1B1J8Z2	Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2
TrEMBL	A0A6N2AQE3	GH18 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_024953 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg31570, jg31571, jg33012, jg3953, jg3954, jg3955, jg5966
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10561, gene_10562, gene_11464, gene_11465
Amaranthaceae	Atriplex hortensis	2	Ah014680, Ah014681
Amaranthaceae	Beta vulgaris	3	BVRB_6g137090, BVRB_8g197730, BVRB_8g197740
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25904, Sbi_jg9749
Amaranthaceae	Salicornia europaea	1	Seu_jg18932
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00007703, GOSA_00009651, GOSA_00009652
Amaranthaceae	Suaeda glauca	10	Sgl03951, Sgl41831, Sgl42333, Sgl42371, Sgl46631, Sgl47111 ... Sgl61588, Sgl61589, Sgl63997, Sgl68477
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000010159, gene:ENSEOMG00000010529 ... gene:ENSEOMG00000012310, gene:ENSEOMG00000031717, gene:ENSEOMG00000034494, gene:ENSEOMG00000044178, gene:ENSEOMG00000045063, gene:ENSEOMG00000045283, gene:ENSEOMG00000045564, gene:ENSEOMG00000045865, gene:ENSEOMG00000046600
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.8AG0019080, CQ.Regalona.r1.8AG0019090 ... CQ.Regalona.r1.8AG0019100, CQ.Regalona.r1.8BG0023300, CQ.Regalona.r1.8BG0023310, CQ.Regalona.r1.8BG0023320
Anacardiaceae	Pistacia vera	5	pistato.v30179330, pistato.v30179340, pistato.v30250740 ... pistato.v30266070, pistato.v30266080
Apiaceae	Apium graveolens	4	Ag3G01366, Ag3G01367, Ag3G01368, Ag3G01369
Arecaceae	Cocos nucifera	3	COCNU_01G005410, COCNU_01G005420, COCNU_02G014700
Arecaceae	Phoenix dactylifera	8	gene-LOC103697692, gene-LOC103699142, gene-LOC103699734 ... gene-LOC103722003, gene-LOC103724254, gene-LOC120107852, gene-LOC120107853, gene-LOC120107855
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3359.V1.1, AsparagusV1_09.1203.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G08896, Ftri15G09246, Ftri15G22617, Ftri16G13925 ... Ftri3G12564
Brassicaceae	Arabidopsis thaliana	9	AT4G19720.1, AT4G19730.1, AT4G19740.1, AT4G19750.1 ... AT4G19760.1, AT4G19770.1, AT4G19800.1, AT4G19810.1, AT4G19820.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10025464m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g18320.v2.2
Brassicaceae	Brassica nigra	5	BniB03g022990.2N, BniB03g049020.2N, BniB05g016670.2N ... BniB06g015670.2N, BniB08g040230.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G2515, Ceq03G2519, Ceq03G2522, Ceq03G2523, Ceq04G2441
Casuarinaceae	Casuarina glauca	10	Cgl03G2652, Cgl03G2653, Cgl03G2654, Cgl03G2655, Cgl03G2657 ... Cgl03G2658, Cgl03G2659, Cgl03G2663, Cgl03G2664, Cgl04G2667
Dunaliellaceae	Dunaliella salina	1	Dusal.0815s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g21780
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.1507
Plantaginaceae	Plantago ovata	3	Pov_00000933, Pov_00000934, Pov_00015564
Plumbaginaceae	Limonium bicolor	11	Lb1G00603, Lb1G01080, Lb1G01764, Lb2G10684, Lb5G28462 ... Lb5G28465, Lb5G28467, Lb5G28468, Lb5G28471, Lb5G28472, Lb5G28622
Poaceae	Echinochloa crus-galli	8	AH04.1219, AH08.640, AH09.727, BH04.1170, BH08.57, BH09.744 ... CH04.1368, CH09.794
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_4AG0321150, gene-QOZ80_4BG0356740 ... gene-QOZ80_9AG0681120
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0161040.1
Poaceae	Lolium multiflorum	1	gene-QYE76_043475
Poaceae	Oryza coarctata	3	Oco07G003600, Oco08G003780, Oco22G006320
Poaceae	Oryza sativa	2	LOC_Os04g30770.1, LOC_Os11g27400.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G170700, gene-BS78_06G060100
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0303081
Poaceae	Sporobolus alterniflorus	2	Chr16G007490, Chr25G013020
Poaceae	Thinopyrum elongatum	1	Tel2E01G500600
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG040390, gene_TRIDC2BG043390
Poaceae	Triticum aestivum	3	TraesCS2A02G279100.1, TraesCS2B02G296600.1 ... TraesCS2D02G278100.1
Poaceae	Zea mays	2	Zm00001eb169950_P002, Zm00001eb420850_P001
Poaceae	Zoysia japonica	3	nbis-gene-38635, nbis-gene-44950, nbis-gene-59271
Poaceae	Zoysia macrostachya	2	Zma_g18789, Zma_g19530
Portulacaceae	Portulaca oleracea	9	evm.TU.LG04.1098, evm.TU.LG04.1099, evm.TU.LG04.1100 ... evm.TU.LG04.1102, evm.TU.LG05.1644, evm.TU.LG05.1645, evm.TU.LG05.1646, evm.TU.LG05.1647, evm.TU.LG26.381
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g04180
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.51077.2, evm.TU.Scaffold_10_RagTag.146 ... evm.TU.Scaffold_10_RagTag.148, evm.TU.Scaffold_4_RagTag.2204, evm.TU.Scaffold_4_RagTag.2208, evm.TU.Scaffold_4_RagTag.2244
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-13934, nbisL1-mrna-25267, nbisL1-mrna-25272 ... nbisL1-mrna-25274, nbisL1-mrna-25275, nbisL1-mrna-25277, nbisL1-mrna-25406, nbisL1-mrna-25573, nbisL1-mrna-25575
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13175, nbisL1-mrna-13177, nbisL1-mrna-21265
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16581, nbisL1-mrna-4955, nbisL1-mrna-4961
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.478, add.evm.TU.utg000023l.95 ... add.evm.TU.utg000023l.96, evm.TU.utg000008l.1297, evm.TU.utg000033l.92
Rhizophoraceae	Kandelia obovata	4	Maker00000657, Maker00000761, Maker00014825, Maker00018952
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16677, nbisL1-mrna-17475, nbisL1-mrna-1886 ... nbisL1-mrna-22571
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-14537, nbisL1-mrna-22247, nbisL1-mrna-24717 ... nbisL1-mrna-24718, nbisL1-mrna-24720, nbisL1-mrna-24722, nbisL1-mrna-7819, nbisL1-mrna-9181, nbisL1-mrna-9182, nbisL1-mrna-9184, nbisL1-mrna-9187
Salicaceae	Populus euphratica	8	populus_peu05629, populus_peu05632, populus_peu12262 ... populus_peu12263, populus_peu12270, populus_peu12271, populus_peu12980, populus_peu12982
Solanaceae	Lycium barbarum	8	gene-LOC132601219, gene-LOC132601221, gene-LOC132603028 ... gene-LOC132603035, gene-LOC132603036, gene-LOC132603039, gene-LOC132603041, gene-LOC132603044
Solanaceae	Solanum chilense	3	SOLCI001427900, SOLCI007292800, SOLCI007292900
Solanaceae	Solanum pennellii	3	gene-LOC107024565, gene-LOC107024651, gene-LOC107024706
Tamaricaceae	Reaumuria soongarica	3	STRG.12312_chr02_+, gene_8138, gene_9033
Tamaricaceae	Tamarix chinensis	3	TC10G1110, TC10G1111, TC10G1112
Zosteraceae	Zostera marina	2	Zosma01g04200.v3.1, Zosma04g01580.v3.1