Basic Information
Locus ID:
SOLCI007292800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold9154 | 2068 | 3419 | + | SOLCI007292800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 41,439.59 Da | 34.04 | 76.25 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 26 | 361 | 3.01319E-136 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 31 | 355 | 4.3E-75 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 261 | 326 | 8.64E-13 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 31 | 357 | 3.61E-68 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 260 | 326 | 3.9E-102 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 41 | 355 | 3.9E-102 | - |
| SMART | SM00636 | 2g34 | 27 | 355 | 2.0E-98 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 27 | 371 | 66.038116 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 131 | 139 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19750.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_004242561.1 | class V chitinase [Solanum lycopersicum] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2ASK8 | GH18 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_024952 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology