Basic Information
Locus ID:
SOLCI007288200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold9134 | 7301 | 15554 | + | SOLCI007288200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 82,160.47 Da | 42.68 | 94.40 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 469 | 740 | 6.0E-41 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 81 | 98 | 0.72 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 132 | 186 | 5.5E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 14 | 221 | 1.6E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 441 | 740 | 3.69E-69 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 160 | 228 | 6.1E-12 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 435 | 543 | 2.3E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 545 | 754 | 1.2E-50 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 16 | 159 | 3.7E-31 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 149 | 172 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 79 | 107 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 173 | 195 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 125 | 148 | 220.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 175 | 197 | 7.450131 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 81 | 103 | 7.403927 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 466 | 744 | 33.318798 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 383 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03390.1 | STRUBBELIG-receptor family 3. | 0 |
| RefSeq | XP_004251794.1 | protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Solanum lycopersicum] | 0 |
| Q6R2K3 | Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana OX=3702 GN=SRF3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AU52 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_024937 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology