Basic Information
Locus ID:
SOLCI007204100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold882 | 43262 | 46818 | - | SOLCI007204100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 101,549.45 Da | 54.13 | 66.13 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 412 | 445 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 696 | 732 | 0.0083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 556 | 3.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 598 | 1.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 409 | 737 | 1.02E-55 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 181 | 458 | 9.7E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 397 | 767 | 1.2E-62 | IPR015943 |
| SMART | SM00320 | WD40_4 | 407 | 446 | 2.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 690 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 556 | 2.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 691 | 732 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 601 | 639 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 390.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 565 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 565 | 607 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 455 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 448 | 11.629227 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 559 | 11.629227 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 565 | 600 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 709 | 741 | 10.107432 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 433 | 447 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 543 | 557 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 543 | 557 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 433 | 447 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 585 | 599 | 1.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 258 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004249562.1 | WD repeat-containing protein 44-like [Solanum lycopersicum] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C2E8 | WD repeat-containing protein 44-like OS=Solanum chilense OX=4083 GN=EJD97_024710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology