Basic Information
Locus ID:
SOLCI007179100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold871 | 2623 | 6054 | - | SOLCI007179100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 63,620.60 Da | 51.48 | 60.57 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 537 | 568 | 3.1E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 436 | 521 | 1.7E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 436 | 521 | 1.2E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 210 | - | - |
| Coils | Coil | Coil | 425 | 462 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.2 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_015056557.1 | uncharacterized protein LOC107002875 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2C4F7 | PAPA-1 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_024634 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology