Basic Information
Locus ID:
SOLCI007178300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold8703 | 8638 | 14978 | - | SOLCI007178300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 83,254.74 Da | 39.85 | 91.73 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 335 | 8.93398E-171 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 354 | 651 | 6.23818E-163 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 44 | 330 | 1.1E-6 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 360 | 646 | 2.1E-27 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 35 | 333 | 1.02E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 360 | 652 | 4.19E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 354 | 652 | 3.3E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 35 | 335 | 4.4E-38 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 353 | 652 | 29.952677 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 337 | 41.702461 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_004251903.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Solanum lycopersicum] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6N2AQR7 | glycerophosphodiester phosphodiesterase OS=Solanum chilense OX=4083 GN=EJD97_024632 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology