Basic Information
Locus ID:
SOLCI007132900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold8546 | 11797 | 16467 | + | SOLCI007132900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 29,374.85 Da | 34.43 | 98.58 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 88 | 179 | 1.39381E-28 | - |
| Pfam | PF00168 | C2 domain | 86 | 182 | 1.5E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 84 | 204 | 4.17E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 81 | 207 | 1.7E-29 | IPR035892 |
| SMART | SM00239 | C2_3c | 87 | 185 | 3.1E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 68 | 188 | 20.09421 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 128 | 141 | 4.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 103 | 115 | 4.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 150 | 158 | 4.1E-5 | IPR000008 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_010323784.1 | CLB1 isoform X1 [Solanum lycopersicum] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AQQ4 | C2 domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_024495 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology