Basic Information
Locus ID:
SOLCI007115800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold849 | 41276 | 56939 | - | SOLCI007115800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 25,813.61 Da | 46.93 | 94.82 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 75 | 4.88846E-44 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.3E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 88 | 174 | 5.1E-22 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 73 | 1.57E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 82 | 3.2E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 7.1E-41 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 89 | 179 | 13.554 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.734966 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 9.8E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 9.8E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 9.8E-31 | IPR002100 |
| Coils | Coil | Coil | 89 | 109 | - | - |
| Coils | Coil | Coil | 123 | 146 | - | - |
| Coils | Coil | Coil | 66 | 86 | - | - |
| Coils | Coil | Coil | 152 | 172 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_004245665.1 | agamous-like MADS-box protein AGL19 [Solanum lycopersicum] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C7C0 | MADS-box protein SOC1-like OS=Solanum chilense OX=4083 GN=EJD97_024434 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology