Basic Information
Locus ID:
SOLCI007115600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold849 | 22513 | 26380 | + | SOLCI007115600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 52,957.82 Da | 50.67 | 74.37 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 200 | 267 | 3.1E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 456 | 7.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 326 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 371 | 0.017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 169 | 457 | 5.86E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 152 | 461 | 4.5E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 4.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 371 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 283 | 0.086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 456 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 200 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 0.008 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 252 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 457 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 424 | 457 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 294 | 326 | 10.943775 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 335 | 13.482671 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 443 | 457 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_015084491.1 | protein FIZZY-RELATED 2-like [Solanum pennellii] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C4Y3 | ANAPC4_WD40 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_024432 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology