Basic Information
Locus ID:
SOLCI007103000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold845 | 40366 | 43443 | - | SOLCI007103000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 102,518.70 Da | 35.37 | 91.76 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 590 | 863 | 3.47879E-94 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 39 | 73 | 8.4E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 335 | 372 | 0.06 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 587 | 859 | 1.6E-47 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 66 | 444 | 1.5E-42 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 558 | 860 | 3.78E-78 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 335 | 460 | 1.8E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 327 | 3.6E-66 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 662 | 882 | 2.2E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 547 | 661 | 1.3E-35 | - |
| SMART | SM00220 | serkin_6 | 584 | 864 | 4.1E-40 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 122 | 145 | 0.059 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 196 | 219 | 2.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 398 | 422 | 170.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 101 | 123 | 7.257614 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 584 | 864 | 40.117252 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 590 | 612 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 709 | 721 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 485 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015086792.1 | receptor-like kinase TMK4 [Solanum pennellii] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C511 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_024365 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology