Basic Information
Locus ID:
SOLCI006985000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold8065 | 818 | 3259 | - | SOLCI006985000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 51,430.95 Da | 47.81 | 73.92 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 27 | 339 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 41 | 337 | 2.0E-84 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 23 | 392 | 4.08E-118 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 20 | 400 | 3.4E-127 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 9 | 454 | 1.6E-196 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 235 | 248 | 2.5E-50 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 135 | 155 | 2.5E-50 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 176 | 192 | 2.5E-50 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 157 | 180 | 2.8E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 274 | 284 | 2.8E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 76 | 94 | 2.5E-50 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 189 | 204 | 2.8E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 252 | 270 | 2.5E-50 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 43 | 60 | 2.5E-50 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 456 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_015069441.1 | histone deacetylase 6-like [Solanum pennellii] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AZB2 | Histone deacetylase OS=Solanum chilense OX=4083 GN=EJD97_024076 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology