Basic Information
Locus ID:
SOLCI006902700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7919 | 92 | 1352 | - | SOLCI006902700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 40,237.18 Da | 41.13 | 84.64 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 34 | 105 | 2.18E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 39 | 92 | 1.3E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009588991.1 | uncharacterized protein LOC104086449 [Nicotiana tomentosiformis] | 0 |
| TrEMBL | A0A6N2ATM4 | FBA_3 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_023880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 3 | pistato.v30285360, pistato.v30285370, pistato.v30285390 |
| Apiaceae | Apium graveolens | 3 | Ag5G00177, Ag8G00115, Ag8G00116 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1075, evm.TU.LG10.698 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1762 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5563 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1417 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18724 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13722 |
| Solanaceae | Solanum chilense | 3 | SOLCI001505700, SOLCI003744300, SOLCI006902700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107029936, gene-LOC107029937, gene-LOC114076361 |