Basic Information
Locus ID:
SOLCI006871600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold786 | 115585 | 120784 | - | SOLCI006871600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 42,910.75 Da | 43.23 | 100.73 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 63 | 327 | 1.8E-86 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 66 | 326 | 8.5E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 90 | 390 | 1.9E-91 | IPR027417 |
| SMART | SM00382 | AAA_5 | 113 | 294 | 4.1E-4 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 59 | 382 | 1.8E-98 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 256 | 332 | 17.536768 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 91 | 250 | 28.116976 | IPR020588 |
| PRINTS | PR00142 | RecA protein signature | 183 | 212 | 4.4E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 149 | 178 | 4.4E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 356 | 373 | 4.4E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 303 | 332 | 4.4E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 221 | 250 | 4.4E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 270 | 298 | 4.4E-59 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_027768299.1 | DNA repair protein recA homolog 2, mitochondrial [Solanum pennellii] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C3G0 | DNA repair protein recA homolog 2, mitochondrial OS=Solanum chilense OX=4083 GN=EJD97_023801 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology