Basic Information
Locus ID:
SOLCI006813900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ribosomal protein S10p/S20e
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold775 | 124328 | 126033 | - | SOLCI006813900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 13,118.23 Da | 42.78 | 91.45 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 19 | 113 | 3.9E-28 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 17 | 114 | 1.01E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 3 | 116 | 1.9E-48 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 19 | 113 | 1.7E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 16 | 114 | 2.5E-40 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 41 | 56 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 52 | 67 | 5.0E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 74 | 88 | 5.0E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 17 | 30 | 5.0E-14 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 15 | 114 | 18.419329 | IPR001848 |
| Coils | Coil | Coil | 115 | 117 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_004230042.1 | 40S ribosomal protein S20-2 [Solanum lycopersicum] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C5K7 | Ribosomal_S10 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_023677 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology