Basic Information
Locus ID:
SOLCI006787800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Proteinaceous RNase P 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold77 | 452139 | 456962 | + | SOLCI006787800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 63,824.25 Da | 43.80 | 73.60 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16953 | Protein-only RNase P | 328 | 555 | 7.0E-73 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 83 | 288 | 3.3E-77 | IPR033443 |
| Gene3D | G3DSA:3.40.50.11980 | - | 346 | 521 | 1.9E-238 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 90 | 558 | 1.9E-238 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 165 | 199 | 8.516988 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 91 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_004241814.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1 [Solanum lycopersicum] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CCI9 | ribonuclease P OS=Solanum chilense OX=4083 GN=EJD97_023597 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology