Basic Information
Locus ID:
SOLCI006785700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD40 associated region in TFIID subunit, NTD2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold77 | 192212 | 208704 | - | SOLCI006785700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 75,013.52 Da | 49.30 | 79.06 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 357 | 677 | 4.6603E-70 | - |
| CDD | cd08044 | TAF5_NTD2 | 69 | 201 | 1.70664E-51 | IPR007582 |
| Pfam | PF00400 | WD domain, G-beta repeat | 584 | 622 | 1.6E-10 | IPR001680 |
| Pfam | PF04494 | WD40 associated region in TFIID subunit, NTD2 domain | 66 | 195 | 2.9E-43 | IPR007582 |
| Pfam | PF00400 | WD domain, G-beta repeat | 418 | 454 | 1.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 542 | 580 | 4.1E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 354 | 384 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 496 | 6.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 501 | 538 | 9.4E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 347 | 674 | 1.65E-82 | IPR036322 |
| SUPERFAMILY | SSF160897 | Taf5 N-terminal domain-like | 58 | 200 | 9.55E-47 | IPR037264 |
| Gene3D | G3DSA:2.130.10.10 | - | 263 | 501 | 6.8E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 502 | 676 | 7.5E-51 | IPR015943 |
| Gene3D | G3DSA:1.25.40.500 | TFIID subunit TAF5, NTD2 domain | 50 | 200 | 7.3E-50 | IPR037264 |
| SMART | SM00320 | WD40_4 | 583 | 622 | 5.1E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 538 | 7.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 496 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 415 | 454 | 4.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 0.0043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 580 | 1.1E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 506 | 547 | 16.724236 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 505 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 548 | 585 | 13.211037 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 2 | 34 | 8.660924 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 548 | 589 | 16.85791 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 590 | 631 | 16.256382 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 422 | 456 | 16.122709 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 506 | 542 | 12.868311 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 352 | 385 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 422 | 456 | 13.263763 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 464 | 498 | 11.471045 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 590 | 625 | 13.079218 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 609 | 623 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 567 | 581 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 371 | 385 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 525 | 539 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 609 | 623 | 4.1E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 525 | 539 | 4.1E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 441 | 455 | 4.1E-9 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 281 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25150.2 | - | 0 |
| RefSeq | XP_015080057.1 | transcription initiation factor TFIID subunit 5 [Solanum pennellii] | 0 |
| Q6S7B0 | Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana OX=3702 GN=TAF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CCG6 | LisH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_023577 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13432, jg27098 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23143 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029048 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg29081, Sbi_jg29082, Sbi_jg3301 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6635 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000114 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11470, Sgl16870 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013266, gene:ENSEOMG00000036237 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0007940, CQ.Regalona.r1.2BG0021580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30250890 |
| Apiaceae | Apium graveolens | 1 | Ag10G01055 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005360 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707790 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3372.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22993 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003767m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g003770.2N, BniB07g039910.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2419 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2622 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g07040, gene.Cymno06g07690 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0816s00002.v1.0, Dusal.0816s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g17620, gene.Thate04g09640 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-321 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1520 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020029 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G14319, Lb2G14320, Lb7G34568 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.1235, AH06.2467, BH05.1419, CH05.1589 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0546510, gene-QOZ80_6BG0499880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0743140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062843 |
| Poaceae | Oryza coarctata | 4 | Oco11G013980, Oco12G014150, Oco13G003570, Oco14G003960 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g44030.1, LOC_Os07g10520.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G040000, gene-BS78_10G208600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0401514, Pt_Chr0701362, Pt_Chr0701372, Pt_Chr0701399 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G030980, Chr05G008700, Chr0G000150, Chr0G007670 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G791300, Tel7E01G871900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG047050, gene_TRIDC5BG050880 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G317800.1, TraesCS5B02G318400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb239900_P001, Zm00001eb259920_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40884, nbis-gene-9900 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30902, Zma_g33155 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.463, evm.TU.LG15.1001, evm.TU.LG17.463 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12860 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.899, evm.TU.Scaffold_4_RagTag.1444 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22766 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16709, nbisL1-mrna-974 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4285, nbisL1-mrna-9151 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.782 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001337, Maker00004227 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2267, nbisL1-mrna-3736, nbisL1-mrna-3737 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7811, nbisL1-mrna-9711 |
| Salicaceae | Populus euphratica | 2 | populus_peu04695, populus_peu12996 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643797 |
| Solanaceae | Solanum chilense | 1 | SOLCI006785700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023774 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13836 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3596 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06410.v3.1 |