Basic Information
Locus ID:
SOLCI006755200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7642 | 26326 | 28550 | - | SOLCI006755200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 10,905.08 Da | 48.01 | 66.04 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 17 | 89 | 4.99178E-47 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 18 | 88 | 2.5E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 10 | 93 | 3.61E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 93 | 3.8E-39 | - |
| SMART | SM00213 | ubq_7 | 18 | 89 | 3.8E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 93 | 16.189219 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_004243516.1 | small ubiquitin-related modifier 1 [Solanum lycopersicum] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2AU30 | Small ubiquitin-related modifier OS=Solanum chilense OX=4083 GN=EJD97_023444 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology