Basic Information
Locus ID:
SOLCI006753100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7639 | 6434 | 9408 | + | SOLCI006753100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 105,288.52 Da | 29.40 | 102.29 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 334 | 354 | 0.35 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 214 | 236 | 0.096 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 482 | 538 | 5.0E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 673 | 940 | 2.8E-44 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 2.0E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 233 | 3.26E-39 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 358 | 587 | 3.85E-41 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 164 | 419 | 1.87E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 666 | 940 | 7.82E-71 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 746 | 951 | 6.1E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 406 | 473 | 6.8E-12 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 639 | 745 | 1.4E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 474 | 595 | 1.0E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 179 | 8.0E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 180 | 281 | 3.6E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 282 | 401 | 7.8E-27 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 260 | 284 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 477 | 501 | 62.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 212 | 236 | 16.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 670 | 917 | 3.0E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 429 | 452 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 308 | 332 | 44.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 670 | 948 | 36.68269 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 790 | 802 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_004229499.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Solanum lycopersicum] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6N2AU63 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_023437 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology