Basic Information
Locus ID:
SOLCI006736600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7601 | 35670 | 45724 | + | SOLCI006736600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 80,805.83 Da | 47.50 | 77.47 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 633 | 674 | 1.05E-7 | - |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 559 | 598 | 2.48E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 556 | 606 | 4.2E-10 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 630 | 682 | 1.6E-11 | - |
| SMART | SM00333 | TUDOR_7 | 557 | 616 | 0.48 | IPR002999 |
| SMART | SM00333 | TUDOR_7 | 631 | 689 | 0.093 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 516 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 517 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_027773828.1 | uncharacterized protein LOC107021116 isoform X3 [Solanum pennellii] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A6N2ASC8 | Agenet domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_023387 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology