Basic Information
Locus ID:
SOLCI006729000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold759 | 3342 | 8177 | - | SOLCI006729000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.47 | 175,262.52 Da | 42.40 | 70.70 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 1013 | 1099 | 3.7316E-30 | - |
| Pfam | PF00855 | PWWP domain | 1013 | 1099 | 4.7E-16 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 1009 | 1137 | 2.71E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 1006 | 1106 | 1.1E-23 | - |
| SMART | SM00293 | PWWP_4 | 1013 | 1074 | 4.5E-9 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 1015 | 1076 | 14.35871 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1275 | 1300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1336 | 1354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1336 | 1359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 978 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1476 | 1508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1459 | 1475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1247 | 1261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1221 | 1300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1459 | 1508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 83 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_015073289.1 | uncharacterized protein LOC107017621 [Solanum pennellii] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2CAB5 | PWWP domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_023371 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology