Basic Information
Locus ID:
SOLCI006669800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7487 | 4557 | 15520 | + | SOLCI006669800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 65,069.47 Da | 39.40 | 93.33 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 271 | 557 | 1.47277E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 363 | 387 | 0.27 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 557 | 9.8E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 514 | 0.0052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 299 | 7.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 557 | 1.65E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 519 | 570 | 2.6E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 262 | 518 | 1.0E-53 | IPR015943 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 0.0057 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 2.9E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 10.0 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 152 | 3.6E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 7.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 0.079 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 3.6 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.765324 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.100143 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 557 | 12.314676 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 349 | 9.731054 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 367 | 389 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 302 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 10.12455 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 557 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 498 | 524 | 8.570195 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015081933.1 | WD repeat-containing protein 26 homolog [Solanum pennellii] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AV02 | WD repeat-containing protein 26-like OS=Solanum chilense OX=4083 GN=EJD97_023199 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology