Basic Information
Locus ID:
SOLCI006664000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7474 | 8590 | 9336 | + | SOLCI006664000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 29,208.31 Da | 49.06 | 81.33 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 201 | 242 | 1.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 190 | 247 | 3.77E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 248 | 4.8E-19 | IPR013083 |
| SMART | SM00744 | ringv_2 | 201 | 242 | 0.0084 | IPR011016 |
| SMART | SM00184 | ring_2 | 202 | 241 | 3.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 202 | 242 | 13.153163 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049372033.1 | uncharacterized protein LOC125836922 [Solanum verrucosum] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AV10 | RING-type domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_023173 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615241 |
| Solanaceae | Solanum chilense | 2 | SOLCI006664000, SOLCI007493300 |