Basic Information
Locus ID:
SOLCI006610100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Zn-finger in Ran binding protein and others
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold737 | 113719 | 118910 | + | SOLCI006610100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 89,675.87 Da | 65.44 | 51.52 | -1.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 383 | 410 | 5.4E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 349 | 377 | 1.5E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 342 | 378 | 2.31E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 341 | 379 | 5.1E-17 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 380 | 411 | 1.5E-7 | - |
| SMART | SM00547 | zf_4 | 384 | 408 | 0.069 | IPR001876 |
| SMART | SM00547 | zf_4 | 351 | 375 | 2.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 382 | 411 | 9.190362 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 349 | 378 | 10.10503 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 386 | 405 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 353 | 372 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 783 | - | - |
| Coils | Coil | Coil | 55 | 75 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010312825.2 | DNA polymerase zeta catalytic subunit [Solanum lycopersicum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2C6D7 | Zinc finger protein VAR3, chloroplastic OS=Solanum chilense OX=4083 GN=EJD97_023006 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology