Basic Information
Locus ID:
SOLCI006583800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold732 | 245562 | 248189 | - | SOLCI006583800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 45,274.78 Da | 38.23 | 77.84 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 287 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 244 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 331 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 387 | 0.003 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 18 | 86 | 3.0E-24 | IPR022052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 104 | 389 | 7.59E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 402 | 5.9E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 287 | 0.0051 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 388 | 0.0063 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 195 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 331 | 2.9E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 162 | 197 | 9.230148 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 253 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 197 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 333 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 298 | 333 | 10.495596 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 318 | 332 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 182 | 196 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 6.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 318 | 332 | 6.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 6.5E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_004231043.1 | WD-40 repeat-containing protein MSI2 [Solanum lycopersicum] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C5P1 | CAF1C_H4-bd domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_022920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology