Basic Information
Locus ID:
SOLCI006560600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold728 | 225711 | 229910 | - | SOLCI006560600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 45,662.64 Da | 51.71 | 71.87 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 137 | 211 | 7.66657E-50 | - |
| CDD | cd12354 | RRM3_TIA1_like | 256 | 331 | 1.23221E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 258 | 324 | 5.2E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 138 | 208 | 3.6E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 53 | 119 | 1.8E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 35 | 129 | 3.09E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 130 | 217 | 9.54E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 246 | 338 | 1.49E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 133 | 1.4E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 234 | 335 | 6.9E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 134 | 215 | 1.8E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 52 | 121 | 6.3E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 257 | 327 | 2.0E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 137 | 210 | 3.4E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 51 | 125 | 14.197654 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 136 | 214 | 16.926517 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 256 | 331 | 15.084535 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 252 | - | - |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015070436.1 | oligouridylate-binding protein 1B isoform X1 [Solanum pennellii] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CB38 | Oligouridylate-binding protein 1-like OS=Solanum chilense OX=4083 GN=EJD97_022836 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology