Basic Information
Locus ID:
SOLCI006504300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7173 | 12160 | 12705 | - | SOLCI006504300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 20,580.72 Da | 37.94 | 70.00 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 135 | 178 | 4.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 181 | 8.48E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 181 | 6.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 136 | 177 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 178 | 13.049892 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010327573.1 | probable E3 ubiquitin-protein ligase RHG1A [Solanum lycopersicum] | 0 |
| Q0VD51 | E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AVF2 | RING-type domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_022671 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 4 | gene-LOC132608083, gene-LOC132608086, gene-LOC132608267 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI006504300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032069 |