Basic Information
Locus ID:
SOLCI006490500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
SHR-binding domain of vacuolar-sorting associated protein 13
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold715 | 2511 | 38833 | - | SOLCI006490500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 397,524.22 Da | 42.20 | 89.76 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 1970 | 2074 | 1.21467E-4 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 2705 | 2896 | 1.4E-11 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1577 | 1715 | 4.3E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1366 | 1485 | 1.0E-9 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 47 | 193 | 9.1E-17 | IPR031642 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 1955 | 2094 | 2.6E-5 | IPR035892 |
| SMART | SM00694 | dysfc | 2297 | 2337 | 0.0057 | IPR006614 |
| SMART | SM00233 | PH_update | 223 | 333 | 0.007 | IPR001849 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.1 | calcium-dependent lipid-binding family protein. | 0 |
| RefSeq | XP_015087740.1 | uncharacterized protein LOC107031055 isoform X1 [Solanum pennellii] | 0 |
| Q709C8 | Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C3D8 | PH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_022618 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology